Reregister Theme from temporary to permanent domain

I've been developing our site using a temporary domain. The site is live and has been switched to our permanent domain, however now I'm unable to update the Theme. I searched the forum and found that I need to deregister the temporary domain and register the permanent one. I found the API http://api.muffingroup.com/licenses/ but that seems to indicate that I should remove all of my theme files, which I don't want to do. 

Please advise how I should proceed.

Michael

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